SSBSS 2015

There will be four poster sessions at SSBSS 2015. Posters can be up to A0 size and can be horizontally or vertically oriented.

Poster Session I (Posters from 1 to 28) will be Monday, July 6th from 19:30-20:30. Presenters in Poster Session I should set up their posters Monday morning (or during the lunch) and take them down immediately after the session.

Poster Session II (Posters from 29 to 56) will be Tuesday, July 7th from 19:30-20:30. Presenters in Poster Session II should set up their posters Tuesday morning (or during the lunch) and take them down immediately after the session.

Poster Session III (Posters from 57 to 84) will be Wednesday, July 8th from 16:00-17:00. Presenters in Poster Session III should set up their posters Wednesday morning (or during the lunch) and take them down immediately after the session.

Poster Session IV (Posters from 85 to 115) will be Thursdays, July 9th from 18:30-19:30. Presenters in Poster Session III should set up their posters Thursdays morning (or during the lunch) and take them down immediately after the session.

1. Lenny Meijer, Downstream coupling of dissipative DNA-based circuits to enzymatic actuators
2. Karl Peebo, Measuring and optimizing the proteome of Escherichia coli
3. Jakub Rydzewski, Computational Sensitivity Analysis of Extrinsic Apoptosis Reaction Model
4. Hee Jin Yang, Interplay of the number of origin of replication and cell physiology
5. Guillaume Cambray, Massive Factorial Design of Coding Sequences Reveals the Complex Phenotypic Consequences of Translation Determina
6. Andrea Patanè, Designing Minimal Microbial Cells via Pareto Optimality
7. Jerome Salignon, Genetics in Dynamic Environments
8. Gabor Boross, Epistatic interactions do not constrain the evolution of gene expression
9. Aleksandar Ivanov, The role of smallRNAs in the transgressive phenotype of hybrid plants
10. Hui-Ju Chiang, Synthesizing Neuromorphic Computation: Connecting MAPK and Neurons of Hodgkin-Huxley Model
11. Paula Gregorio, Multipurpose Extensions of the GRO simulator
12. Sonya Iverson, E. coli MoClo assembly & part library: Applications in traditional biological research
13. Pauline Traynard, A bi-directional coupled model of the cell cycle and the circadian clock
14. Hariharan Dandapani, Engineering cyanobacteria for sustainable biofuel production
15. Martin Gutierrez, Multipurpose Extensions of the GRO simulator
16. Rosa Hernansaiz-Ballesteros, Analysing efficiency of biological and computational switches
17. Marc Rullan Sabater, Robust and precise optogenetic control of gene expression with a light-switchable twocomponent system
18. Timo Wolf, Establishment of a transcriptomic platform for the acarbose producer Actinoplanes and the characterization of transcriptional regulators
19. Christopher Jonkergouw, Synthetic genetic circuits for programming the structure of materials
20. Nicole Schnass, Development of a Highly Efficient Gene Delivery System for Syngas Fermenting Clostridia
21. Tetiana Gren, Development of genetic engineering methods for Actinoplanes sp. SE50/110
22. Koji Ishikawa, Systematic identification of dosage compensation proteins in Saccharomyces cerevisiae
23. Melanie Däschinger, Time Series Evolution for Integrating Developmental Burglary Processes
24. Matias Munck Mortensen, Heterologous membrane transport of plant metabolites in Saccharomyces cerevisiae
25. Eugene Fletcher, Adaptive laboratory evolution of low pH tolerance in Saccharomyces cerevisiae
26. Federico Paoletti, A New Tau Yeast Model: A Systems Biology Approach to Alzheimer’s Disease
27. Noa Katz, A Synthetic Biology Approach for Screening RBP Binding Sites
28. Michiel Vanmeert, A multi-method approach in the development of a novel XNA-ligase
29. Trevor Y. H. Ho, Optimizing architecture and reporter improves dynamic range of regulation by dCas9 based transcription factors
30. Ismael Gómez García, A computer aided approach for biological protocol description and execution
31. Stefanie Kasielke, Parameter identification for cellular signalling networks
32. Vishal Gupta, A computer aided approach for biological protocol description and execution
33. Jens Christian Nielsen, Biosynthetic potential and comparative genomics of the Penicillium genus
34. Guillermo Perez del Pulgar Frowein, Multipurpose Extensions of the GRO simulator
35. Sarah Guiziou, An open access part toolbox to tune genetic expression in Bacillus subtilis
36. Hilde Coumou, Synthetic yeast based cell factories for the production of plant natural colors
37. David Orozco, A Study of the Dynamics of the tna Operon on Escherichia coli
38. João Cardoso, A Python Library for Computer Assisted Metabolic Engineering and Optimization of Cell Factories
39. Justin Melunis, A molecular model of Stim - Orai movement and binding and their influence on calcium dynamics in T cell receptor response
40. Janneth Gonzalez, Computational approach for GRP78–NF-κB binding interactions in the context of neuroprotective pathway in brain injuries
41. Stephanie Braun Galleani, Chiral amino-alcohol synthesis from biodiesel waste glycerol in Pichia pastoris
42. Huda Al-Nayyef, Impact of Transposable Elements on the Genomic Inversions of Bacterial Species
43. Tim Weenink, Promoters going Head-to-Head: Transcriptional Interference in Convergently Placed Promoters in S. Cerevisiae
44. Haotian Guo,Synthetic RNA Regulator Designs for Multiple Regulation Coupling, Improved Dynamic Range and Robustness smplify the Multi-State Theory for Biomolecule Functions
45. Tiago Rito, Gene expression changes in neuronal differentiation captured by Hi-C trees
46. Klaus Palme, High resolution analysis of root organ and single cells reveals a crucial role of PIN8 as gatekeeper for nuclear auxin signaling
47. Wojciech Labaj, Improved stability of gene signature based on new heuristic GO annotation algorithm
48. Zakir Tnimov, Optimisation of genetic encoding of unnatural amino acids in mammalian cells
49. Christian Arenas, Development of Cupriavidus necator as a chassis for the production of fatty acid derivatives from gasified biomass
50. Balint Csorgo, Development of a highly precise, portable genome engineering method
51. Niclas Nordholt, Characterisation of an IPTG inducible promoter library in Bacillus subtilis
52. Matan Shanzer, Viral based design: remodeling the Hippo pathway from tumor suppression to oncogenesis
53. Anna Papiez, P-Value Integration Biomedical Experiments
54. Sebastian Waldher, Enzyme Engineering through forced adaptive evolution - Exemplification by a theoretical limonene network using the yeast model iND750 in a Cobra 2.0 environment
55. Marzena Dolbniak, The exploration of single-cell protein expression data
56. Rasoul Rajaei, Structural Controllability Analysis Biological Complex Networks
57. Jerzy Kozyra, Programming synthetic scaffolds for DNA origami
58. Andrea Santoro, A class of Pareto optimal Escherichia coli strains for production of 1,4-butanediol
59. Burcu Tepekule, Molecular Communication Between Two E. Coli Chambers
60. Linlin Zhao, Information Integration and Decision Making in Flowering Time Control
61. Michael Lukesch, Tuning enzyme properties by residue-specific incorporation of non-canonical amino acids
62. Adèle Dramé-Maigné, Artificial networks and droplet compartmentalization as high-throughput selection tools for directed evolution of the nicking enzyme Nt.BstNBI (NBI)
63. Jascha Diemer, Kinetics on a single cell level in a high throughtput approach
64. Evelyne Deery, Genetically reprograming E. coli as a cobalamin (vitamin B12) producer
65. Stefanie Frank, Bacterial microcompartments – structure, function and applications in synthetic biology
66. Robert Chen, Microscopy Codes: A Barcoding Strategy Enabling Higher-Throughput Library Screening by Microscopy
67. Katharina Heil, A rule-based model of Clathrin Mediated Endocytosis: Gaining a better understanding of Parkinson's Disease
68. Alexandra Bergman, Overproduction of Fatty Acids in Yeast Through the Use of an Optimized Heterologous Phosphoketolase Pathway
69. Victoria Wosika, Dynamic measurement of the transcription and translation from a single DNA locus in living cells
70. Anniek den Hamer, 14-3-3 proteins as a scaffold for small molecule controlled signaling platforms
71. Areti Ioanna Tsigkinopoulou, Unravelling the γ-butyrolactone network in Streptomyces coelicolor under uncertainty by employing deterministic and stochastic modelling approaches
72. Gabriela Michel, Self-construction of the Macaque Cortex
73. Nadia Heramvand, Inferability of Complex Networks
74. Débora Trichez, A novel synthetic pathway for the production of glycolic acid from xylose
75. Ceren Alkim, An original synthetic pathway allows the production of ethylene glycol from xylose in Escherichia coli
76. Janina Atanasov, Control of miRNA function by ligand-dependent RNA-based regulators
77. Christopher Schneider, Design and implementation of RNA-regulated genetic circuits following Boolean Logic
78. Jon Berengut, Design of rotationally symmetric DNA nanotubes
79. Armin Khonsari, Regulatory Principles of Microbial Growth Control
80. Cyprien Verseux, A systems and synthetic biology approach to Mars exploration
81. Seyed Babak Loghmani, Constraint-based genome scale metabolic network reconstruction of clostridium phytofermentans
82. Beatrice Viviane Vetter, Electrons à la Carte: Fine-Tuning of Exoelectrogenic Bacteria using Synthetic Biology
83. Nadim Mira, A New Bimolecular Synthetic Kinase Activity Relocating Sensor to Quantify Localized Activity of MAPK
84. Mathew Jessop Fabre, Production of 3-Hydroxypropanionic acid in Saccharomyces cerevisiae using the EasyClone MarkerFree Method
85. Mariko Matsuura, Development and Characterization of a Nucleoside Kinase that Accepts Unnatural Nucleoside dP, a Part of an Expanded DNA
86. Andy (Yao Zong) Ng, Synthetic Biology Tools for Metabolic Engineering
87. Søren Petersen, Functional mining of metagenomes using synthetic selections
88. Michael Schantz Klausen, MODEST: A Web-based Design Tool for Oligonucleotide-mediated Genome Engineering and Recombineering
89. Kelly Walker, Tat dependent export of hGH and IfN is independent of prior disulfide bond formation
90. Nan Hao, Road rules for traffic on DNA – Systematic analysis of gene regulation by encounters between transcribing RNA polymerases and DNA-bound proteins in vivo
91. Muhammad Usman Sanwal, Large-scale modelling of living cells
92. Konstantinos Vavitsas, Assembly of a diterpenoid pathway in the chloroplast; the effect of N-terminal modifications in CYP720B4
93. Hendrik van Roekel, Design and Analysis of Programmable Enzymatic DNA-Based Circuits
94. Suraj Sharma, Mathematical models of glucosinolate metabolism in plants
95. Chuankui Song, Biosynthesis of acylphloroglucinols in strawberry fruit
96. Manca Bizjak, Computational approaches for quantitative modeling of gene regulatory networks with multiple transcription factor DNA binding site repeats
97. Daniel Veres, ComPPI: a cellular compartment-specific database for protein–protein interaction network analysis
98. Elizabeth Saunders, Metabolic Analysis of Solventogenic Clostridium Saccharoperbutylacetonicum N1-4 (HMT)
99. Robert Oppenheimer, Cooperative Molecular Biosensor
100. S. Criscuolo, Optogenetic modulation of RE1 Silencing Transcription Factor (REST) via DNA and RNA strategies
101. Amir Feizi, HCSD: Human Cancer Secretome Database
102. Xiaoyong Pan, Anne Wenzel, Lars Juhl Jensen, Jan Gorodkin, Genome-wide Prediction of Putative Natural microRNA Sponges from microRNA binding sites
103. Mikael Boulle, Alex Sigal, The number of virions infecting each cell determines timing and success of infection in the face of antiretroviral drugs
104. Marzia Di Filippo, Study of Cancer Metabolic Rewiring with tissue specific constraint-based models
105. Maria Pires Pacheco, Elisabeth John, Tony Kaoma, Merja Heinaniemi, Nathalie Nicot, Laurent Vallar, J. Bueb, Lasse Sinkkonen, Thomas Sauter, Integrated Metabolic Modelling Reveals Cell type specific control points of the Macrophage Metabolic Network
106. Joanna Zyla, Christophe Badie, Ghazi Alsbeih, Joanna Polanska, Comprehensive multiomics analysis of radiosensitivity phenomena
107. Krishna Kanhaiya, Vladimir Rogojin, Ion Petre, Structural controllability of cancer network
108. I. Zamani, M. Shafiee, A. Ibeas, Endocrine Disruptor Diethylstilbestrol Modelling
109. Federico Reali, Dynamical modelling provides mechanistic insight on the link between sphingolipid metabolism and insulin resistance
110. E. Cortes-Sanchez, J. May, S. De Ornellas, G, Burley and P. A. Hoskisson, Approaches to antibiotic discovery: Merging Pyrrole Amides in Actinomycetes
111. Hook Ch. D., Sycheva E., Samsonov V., Savrasova E., Eremina N., Geraskina N., Stoynova N. V., Artificial Auto-Inducible Expression System as a Tool for Metabolic Engineering
112. Ozan Kahramanogullari, Gener: A minimal programming module for chemical controllers based on DNA strand displacement
113. Will Finnigan, Nic Harmer, Jenny Littlechild, Radka Snajdrova, Joe Adams, Thermophiles as cell factories for biocatalysis
114. Hari Raj Singh, Markus Hassler, Sebastien Huet, Gyula Timinszky & Andreas Ladurner, DNA damage activates the human chromatin remodeler ALC1 through ADP-ribosylation
115. Hasan Baig and Jan Madsen, Analysis and Verification of Genetic Logic Circuits using D-VASim